biomodal duet multiomics software documentation#

Welcome to the biomodal duet multiomics solution bioinformatics documentation hub. In this space, you will find everything you need to install, run, and interpret data generated with the duet evoC and duet +modC multiomics solutions.

Software Overview#

The biomodal duet multiomics software provides a comprehensive solution for analyzing biomodal data. It includes tools for data processing, analysis, and visualization, making it easier for researchers to gain insights from their data.

The structure of the biomodal software is shown in this diagram:

The typical user flow for the biomodal software is as follows:

Download the biomodal CLI.
Run a bootstrapping script to setup the required environment.
- The script that you use will depend on whether you are running an HPC or cloud environment and whether you are installing using Conda or as a root user.
Run biomodal init to set up the necessary configuration files.
- This will automatically download the latest version of the duet pipeline software.
Run biomodal test to make sure your system is properly configured.
- Includes downloading a small test dataset and running the duet pipeline on it.
Run biomodal analyse with the proper settings to run the pipeline on your data.
- Based on this example.
Read and interpret the results.
- Further guidance on interpreting the outputs from the pipeline can be found in the data interpretation guide.

Other Capabilities#

You can download new versions of the duet pipeline software by running biomodal download.
You can maintain multiple versions of the duet pipeline software on your system and choose to analyse with whichever you choose.
The biomodal CLI also allows you perform other tasks, including:
- Gathering relevant information about your system with biomodal info.
- Generating a new set files for a different reference genome with Generating support for a new reference genome with the reference genome pipeline.

Available guides#

duet software installation and running guide#

Learn in detail how to download, install and run the command line interface (CLI) for processing data.

data interpretation guide#

A comprehensive bioinformatics data interpretation guide for duet +modC and duet evoC

📝 Learn about the analysis workflow.

📁 Learn about the output files.

📈 Learn about the analysis metrics and summary report.